- Design of sgRNA libraries for tiling experiments: http://crispor.tefor.net/crispor.py?batchId=ozJbN0W08qlgEBn3RvZK
- Count sgRNA from NGS, analyze CRISPR tiling screens: https://crisprsurf.pinellolab.partners.org/
- Detect/quantify genome editing by NGS/amplicon sequencing: http://crispresso2.pinellolab.org/submission
- Is gene X expressed in cell type Y?: http://biogps.org/#goto=welcome or https://cellxgene.cziscience.com/gene-expression?utm_source=twitter&utm_medium=social&utm_campaign=ge_fmg_2023&utm_content=2023_twitter_1
- Database of ChIP-seq experiments: http://cistrome.org/db/#/
- Database of PROTACs: http://cadd.zju.edu.cn/protacdb/about
- Existing KO mouse lines & phenotype: https://www.mousephenotype.org/
- Protein sequence to molecular weight: https://web.expasy.org/compute_pi/
- Make KOs with base editors by targeting splicing acceptor or donor sites: https://moriaritylab.shinyapps.io/splicer/
- Find protein partners of your favorite protein: https://thebiogrid.org/ and https://opencell.czbiohub.org/ (also: resource for C-term GFP tagging)
- sgRNA design tool for SpG and SpRY nucleases: https://www.crisprscan.org/
- Find a sequence in the genome: https://genome.ucsc.edu/cgi-bin/hgBlat?hgsid=1547504093_Lp2XvM5n043oBeMBZ82YvqbWSmKL&command=start
Seruggia lab 